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文章标签:ISO  PROC  数据  scripts  SEQ  PAC  
Scripts for identifying primers and polyA tails in PacBio transcriptome data

  • 源代码名称:cDNA_primer
  • 源代码网址:http://www.github.com/PacificBiosciences/cDNA_primer
  • cDNA_primer源代码文档
  • cDNA_primer源代码下载
  • Git URL:
    git://www.github.com/PacificBiosciences/cDNA_primer.git
  • Git Clone代码到本地:
    git clone http://www.github.com/PacificBiosciences/cDNA_primer
  • Subversion代码到本地:
    $ svn co --depth empty http://www.github.com/PacificBiosciences/cDNA_primer
    Checked out revision 1.
    $ cd repo
    $ svn up trunk
  • 上次更新:10/15/2015

    重要:这个 GITHUB repo/wiki将不再更新。 到 2017/12/07,我已经删除了许多与老的GitHub豆腐代码相关的维基,我们不再维护。 现在新的iso序列信息( 包括 SMRTLink 4.0和上版本) 将在新的 iso seq存储库版本中维护。 你还将在 Cupcake 存储库中找到许多辅助脚本( ( 崩溃。融合发现等) ) 。 许多链接现在实际上指向新的repo 。

    许可证

    与这里软件包关联的标准PacBio开源许可证:

    #################################################################################$$
    # Copyright (c) 2011-2017, Pacific Biosciences of California, Inc.
    #
    # All rights reserved.
    #
    # Redistribution and use in source and binary forms, with or without
    # modification, are permitted (subject to the limitations in the
    # disclaimer below) provided that the following conditions are met:
    #
    # * Redistributions of source code must retain the above copyright
    # notice, this list of conditions and the following disclaimer.
    #
    # * Redistributions in binary form must reproduce the above
    # copyright notice, this list of conditions and the following
    # disclaimer in the documentation and/or other materials provided
    # with the distribution.
    #
    # * Neither the name of Pacific Biosciences nor the names of its
    # contributors may be used to endorse or promote products derived
    # from this software without specific prior written permission.
    #
    # NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
    # GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
    # BIOSCIENCES AND ITS CONTRIBUTORS"AS IS" AND ANY EXPRESS OR IMPLIED
    # WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
    # OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    # DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
    # CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
    # SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
    # LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
    # USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    # ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
    # OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
    # OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
    # SUCH DAMAGE.
    #################################################################################$$


    文章标签:数据  PAC  PROC  scripts  ISO  SEQ  

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